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CLion not-catkin packages

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I am using CLION for development of ROS C++ files. In my project some files are not catkin compatible but standalone CPP packages. When loading the top level CMakeLists into CLion, I receive an error, because it apparently evokes catkin_make CMake Error at /opt/ros/kinetic/share/catkin/cmake/catkin_workspace.cmake:95 (message): This workspace contains non-catkin packages in it, and catkin cannot build a non-homogeneous workspace without isolation. Try the 'catkin_make_isolated' command instead. How can I configure CLion to be able to load my entire workspace with catkin_make_isolated or catkin build

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